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ccim workflow  (fluidigm)


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    fluidigm ccim workflow
    Ccim Workflow, supplied by fluidigm, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ccim+workflow/ccim+workflow/pm37169965-95-250-238
    Average 90 stars, based on 1 article reviews
    ccim workflow - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Expressing:

    Article Title: Comparative analysis of cell-cell communication at single-cell resolution.
    Article Snippet: .. When defining each cell’s transcriptome as Pancreas islets (C1) Uterine decidua (SS2) HNSCC (SS2) Ra w AL RA – de no ise d Ra w AL RA – de no ise d Ra w AL RA – de no ise d 5 10 15 20 30 40 50 7510 0 5 4 3 2.5 5 10 15 20 30 40 50 7 5 10 0 5 4 3 2.5 5 10 15 20 30 40 50 7510 0 5 4 3 2.5 25 50 75 100 Pr op or tio n of G T ce ll– ce ll pa irs w he re L IS I > 1 1.2 1.4 1.6 Average LISI score for GT cell–cell pairs d U M AP 2 UMAP1 Exhaustion score Intratumoral T cells T cell – CD1C + DC cell–cell pairs a b e 3 2 0 1U M AP 2 UMAP1 Clusters Normal Tumor U M AP 2 UMAP1 Source CCL5–CCR1 CCL4–CCR1 CCL3–CCR1 IFNL1–IL10RB CTLA4–CD86 CTLA4–CD80 TIGIT–PVR IL13–IL13RA1 CSF2–CSF2RA –0.5 0 0.5 1.0 Ligand–receptor pair Av er ag e di e re nc e T op e xh au st ed v s. no n- ex ha us te d cl us te rs 0.2 0.4 0.6 0.8 Power c 0 1 2 3 Ex ha us tio n C lu st er –0.20 –0.15 –0.10 –0.05 0 0.05 Average expression Percent expressed 10 20 30 40 Exhaustion score by cluster Fluidigm C1 or Smart-Seq2 dataset ground truth (GT) Randomly downsample to inDrop coverage CCIM workflow CCIM or agglomerativeworkflow Integrate GT & downsampled CCIM Assess capturing of GT states with LISI Clusterresolution Neighborhood size 0 100 200 Pa nc rea s isl ets (C 1) Ut eri ne de cid ua (S S2 ) HN SC C (SS 2) Fo ld d at as et d ow ns am pl ed to re ac h m ea n in D ro p co ve ra ge Cluster resolution Neighborhood size Cluster resolution Neighborhood size U M AP 2 U M AP 2 UMAP1 UMAP1 Source Exhaustion score Normal Tumor Fig. 2 | Benchmarking and robustness analysis of cell-resolved communication analysis. a, UMAP projections of 1,624 intratumoral T cells from the SCC dataset from Ji et al.29, colored by cluster identity (top left), sample of origin (tumor or matched normal; bottom left) and T cell exhaustion score (middle) (Methods). ..



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    ccim workflow  (fluidigm)
    90
    fluidigm ccim workflow
    Ccim Workflow, supplied by fluidigm, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ccim+workflow/ccim+workflow/pm37169965-95-250-238
    Average 90 stars, based on 1 article reviews
    ccim workflow - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

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